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civicpy 1.1.3 documentation
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The
civic
module
The
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Commandline Utilities
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Index
_
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A
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B
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C
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D
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E
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F
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G
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H
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I
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L
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M
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N
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O
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P
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R
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S
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T
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U
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V
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W
_
__init__() (civic.CivicRecord method)
A
Accepted (class in civic)
acmg_codes (civic.Assertion attribute)
addrecord() (exports.VCFWriter method)
addrecords() (exports.VCFWriter method)
aliases (civic.Gene attribute)
(civic.Variant attribute)
allele_registry_id (civic.Assertion attribute)
(civic.Variant attribute)
amp_level (civic.Assertion attribute)
area_of_expertise (civic.User attribute)
Assertion (class in civic)
assertions (civic.Evidence attribute)
(civic.Variant attribute)
B
BaseLifecycleAction (class in civic)
bio (civic.User attribute)
bulk_search_variants_by_coordinates() (in module civic)
C
civic
module
civic_actionability_score (civic.Variant attribute)
CivicAttribute (class in civic)
CivicRecord (class in civic)
clinical_significance (civic.Assertion attribute)
(civic.Evidence attribute)
clinvar_entries (civic.Variant attribute)
CoordinateQuery (class in civic)
coordinates (civic.Variant attribute)
Country (class in civic)
created_at (civic.User attribute)
D
description (civic.Assertion attribute)
(civic.Evidence attribute)
(civic.Gene attribute)
(civic.Organization attribute)
(civic.Variant attribute)
disease (civic.Assertion attribute)
(civic.Evidence attribute)
display_name (civic.User attribute)
drug_interaction_type (civic.Assertion attribute)
(civic.Evidence attribute)
drugs (civic.Assertion attribute)
(civic.Evidence attribute)
E
entrez_id (civic.Gene attribute)
(civic.Variant attribute)
entrez_name (civic.Variant attribute)
evidence (civic.Variant attribute)
Evidence (class in civic)
evidence_direction (civic.Assertion attribute)
(civic.Evidence attribute)
evidence_items (civic.Variant attribute)
evidence_level (civic.Evidence attribute)
evidence_sources (civic.Variant attribute)
evidence_type (civic.Assertion attribute)
(civic.Evidence attribute)
exports
module
F
facebook_profile (civic.User attribute)
fda_companion_test (civic.Assertion attribute)
fda_regulatory_approval (civic.Assertion attribute)
featured_expert (civic.User attribute)
G
gene (civic.Variant attribute)
Gene (class in civic)
gene_id (civic.Evidence attribute)
(civic.Variant attribute)
get_all_assertion_ids() (in module civic)
get_all_assertions() (in module civic)
get_all_evidence() (in module civic)
get_all_evidence_ids() (in module civic)
get_all_gene_ids() (in module civic)
get_all_genes() (in module civic)
get_all_variant_ids() (in module civic)
get_all_variants() (in module civic)
get_assertion_by_id() (in module civic)
get_assertions_by_ids() (in module civic)
get_gene_by_id() (in module civic)
get_genes_by_ids() (in module civic)
get_variant_by_id() (in module civic)
get_variants_by_ids() (in module civic)
groups (civic.Variant attribute)
H
hgvs_expressions (civic.Variant attribute)
I
id (civic.CivicRecord attribute)
iso (civic.Country attribute)
L
LastModified (class in civic)
LastReviewed (class in civic)
lifecycle_actions (civic.Assertion attribute)
(civic.Evidence attribute)
(civic.Gene attribute)
(civic.Variant attribute)
LifecycleAction (class in civic)
linkedin_profile (civic.User attribute)
M
module
civic
exports
N
name (civic.Assertion attribute)
(civic.Country attribute)
(civic.Evidence attribute)
(civic.Gene attribute)
(civic.Organization attribute)
(civic.User attribute)
(civic.Variant attribute)
nccn_guideline (civic.Assertion attribute)
nccn_guideline_version (civic.Assertion attribute)
O
orcid (civic.User attribute)
Organization (class in civic)
P
parent (civic.Organization attribute)
phenotypes (civic.Assertion attribute)
(civic.Evidence attribute)
profile_image (civic.Organization attribute)
R
rating (civic.Evidence attribute)
role (civic.User attribute)
S
search_variants_by_allele_registry_id() (in module civic)
search_variants_by_coordinates() (in module civic)
search_variants_by_hgvs() (in module civic)
search_variants_by_name() (in module civic)
site_link (civic.CivicRecord attribute)
(civic.CivicRecord property)
source (civic.Evidence attribute)
sources (civic.Variant attribute)
statement (civic.Evidence attribute)
status (civic.Assertion attribute)
(civic.Evidence attribute)
Submitted (class in civic)
summary (civic.Assertion attribute)
(civic.Variant attribute)
T
timestamp (civic.BaseLifecycleAction attribute)
twitter_handle (civic.User attribute)
type (civic.CivicRecord attribute)
types (civic.Variant attribute)
U
update() (civic.CivicRecord method)
url (civic.Organization attribute)
(civic.User attribute)
user (civic.BaseLifecycleAction attribute)
User (class in civic)
username (civic.User attribute)
V
variant (civic.Assertion attribute)
Variant (class in civic)
variant_aliases (civic.Variant attribute)
variant_groups (civic.Variant attribute)
variant_origin (civic.Assertion attribute)
variant_types (civic.Variant attribute)
variants (civic.Gene attribute)
VCFWriter (class in exports)
W
writeheader() (exports.VCFWriter method)
writerecords() (exports.VCFWriter method)