Introduction

CIViCpy is designed to be an intuitive SDK and analysis toolkit for the Clinical Interpretations of Variants in Cancer (CIViC) knowledgebase.

License

CIViCpy is released under the MIT license. This places no restrictions on the reuse or adaptation of the CIViCpy code.

The CIViC database content is licensed under the Creative Commons Zero (CC0) public domain dedication, placing no restrictions on reusing or modifying the content.

Citing CIViCpy

If you find CIViCpy useful, we request that you reference it in published works where it is used. For the SDK and the analysis toolkit provided by the software, please cite:

Wagner, A. H., Kiwala, S., Coffman, A. C., McMichael, J. F., Cotto, K. C., Mooney, T. B., Barnell, E. K., Krysiak, K., Danos, A. M., Griffith, O. L. & Griffith, M. CIViCpy: a Python software development and analysis toolkit for the CIViC knowledgebase. bioRxiv 783134 (2019). doi:10.1101/783134

For the cureated content from CIViC, please cite:

Griffith, M. et al. CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer. Nat Genet 49, 170-174, doi:10.1038/ng.3774 (2017).